Package index • ultragsea

All functions

cor_sparse_matrix(): Calculate sparse correlation matrix handling missing values
fc_ztest(): Fast one sample z-test for matrix object F (e.g. foldchanges) and grouping matrix G (e.g. gene sets).
gmt2mat(): Convert GMT to Binary Matrix
gset.cor(): Calculate gene set correlation
makeGseaResult(): Utility to convert fgsea/ultragsea style results to 'gseaResult' object compatible with clusterProfiler and enrichplot functions. Using this function you can use all plotting functions from enrichplot.
mat2gmt(): Convert Binary Matrix to GMT
read.gmt(): Read GMT File
ultragsea(): Ultra-fast GSEA using z-score or geneset correlation. Results of these methods highly correlate with GSEA/fGSEA but are much faster.
write.gmt(): Write GMT File